refactor(store): replace project and skill models with generated models

* Update project creation and retrieval to use generated models
* Modify skill addition and listing to utilize generated models
* Refactor thought handling to incorporate generated models
* Adjust tool annotations to align with new model structure
* Update API calls in the UI to use new ResolveSpec-based endpoints
* Enhance stats retrieval logic to aggregate thought metadata

internal/store/links.go

@@ -2,11 +2,11 @@ package store
 
 import (
 	"context"
-	"encoding/json"
 	"fmt"
 
 	"github.com/google/uuid"
 
+	"git.warky.dev/wdevs/amcs/internal/generatedmodels"
 	thoughttypes "git.warky.dev/wdevs/amcs/internal/types"
 )
 
@@ -44,24 +44,26 @@ func (db *DB) LinkedThoughts(ctx context.Context, thoughtID uuid.UUID) ([]though
 	links := make([]thoughttypes.LinkedThought, 0)
 	for rows.Next() {
 		var linked thoughttypes.LinkedThought
-		var metadataBytes []byte
+		var model generatedmodels.ModelPublicThoughts
 		if err := rows.Scan(
-			&linked.Thought.ID,
-			&linked.Thought.Content,
-			&metadataBytes,
-			&linked.Thought.ProjectID,
-			&linked.Thought.ArchivedAt,
-			&linked.Thought.CreatedAt,
-			&linked.Thought.UpdatedAt,
+			&model.GUID,
+			&model.Content,
+			&model.Metadata,
+			&model.ProjectID,
+			&model.ArchivedAt,
+			&model.CreatedAt,
+			&model.UpdatedAt,
 			&linked.Relation,
 			&linked.Direction,
 			&linked.CreatedAt,
 		); err != nil {
 			return nil, fmt.Errorf("scan linked thought: %w", err)
 		}
-		if err := json.Unmarshal(metadataBytes, &linked.Thought.Metadata); err != nil {
-			return nil, fmt.Errorf("decode linked thought metadata: %w", err)
+		thought, err := thoughtFromModel(model)
+		if err != nil {
+			return nil, fmt.Errorf("map linked thought: %w", err)
 		}
+		linked.Thought = thought
 		links = append(links, linked)
 	}
 	if err := rows.Err(); err != nil {