refactor(store): replace project and skill models with generated models

* Update project creation and retrieval to use generated models
* Modify skill addition and listing to utilize generated models
* Refactor thought handling to incorporate generated models
* Adjust tool annotations to align with new model structure
* Update API calls in the UI to use new ResolveSpec-based endpoints
* Enhance stats retrieval logic to aggregate thought metadata

internal/store/tool_annotations.go

@@ -3,6 +3,8 @@ package store
 import (
 	"context"
 	"fmt"
+
+	"git.warky.dev/wdevs/amcs/internal/generatedmodels"
 )
 
 func (db *DB) UpsertToolAnnotation(ctx context.Context, toolName, notes string) error {
@@ -28,11 +30,11 @@ func (db *DB) GetToolAnnotations(ctx context.Context) (map[string]string, error)
 
 	annotations := make(map[string]string)
 	for rows.Next() {
-		var toolName, notes string
-		if err := rows.Scan(&toolName, &notes); err != nil {
+		var model generatedmodels.ModelPublicToolAnnotations
+		if err := rows.Scan(&model.ToolName, &model.Notes); err != nil {
 			return nil, fmt.Errorf("scan tool annotation: %w", err)
 		}
-		annotations[toolName] = notes
+		annotations[model.ToolName.String()] = model.Notes.String()
 	}
 	return annotations, rows.Err()
 }