* Update project creation and retrieval to use generated models
* Modify skill addition and listing to utilize generated models
* Refactor thought handling to incorporate generated models
* Adjust tool annotations to align with new model structure
* Update API calls in the UI to use new ResolveSpec-based endpoints
* Enhance stats retrieval logic to aggregate thought metadata
- Introduced new tools for managing agent skills and guardrails, including add, remove, and list operations.
- Updated README.md to document new commands and usage patterns for skills and guardrails.
- Enhanced server configuration to support longer read and write timeouts.
- Increased maximum upload size for files to 100 MB and adjusted related configurations.
- Created database migrations for agent skills, guardrails, and their associations with projects.
- Updated relevant code files to integrate new skills and guardrails into the application logic.
